Journal: Insect Science

Article Title: lncR26319/miR‐2834/ EndophilinA axis regulates oogenesis of the silkworm, Bombyx mori

doi: 10.1111/1744-7917.13082

Figure Lengend Snippet: Expression pattern of lncR26319, miR‐2834, and Endophilin A ( EndoA ) in different tissues (A) and developmental stages (B–D) of silkworm B ombyx mori . Different tissues of brain, ventral nerve, testis, ovary, epidermis, hemolymph, Malpighian, silk gland, fat body, and midgut were collected at the 3rd day of the 5th instar larvae. La1‐2d, La2‐2d, La3‐2d, and La4‐2d represent the 2nd d of the 1st, 2nd, 3rd, and 4th instar larvae, respectively. La5‐3d represents the 3rd d of the 5th instar larvae. Pre‐P‐1d and Pre‐P‐2d represent the 1st and 2nd d of prepupa, respectively. P‐1d‐7d represent the 1st d to the 7th d of the pupa stage. A‐1d means the virgin moth. The internal reference of lncRNA26319 was actinA3 , and the internal reference of miR‐2834 was U6. Data represent means ± SEM of 3 different experiments, each conducted in triplicate. Significance analysis was conducted with ANOVA and Student's t ‐test. ANOVA, analysis of variance; SEM, standard error of the mean.

Article Snippet: We previously created a library of B . mori lncRNAs (National Center for Biotechnology Information Transcriptome Shotgun Assembly with accession number of GITK00000000.1).

Techniques: Expressing

Journal: Applications in Plant Sciences

Article Title: Annotation and re-sequencing of genes from de novo transcriptome assembly of Abies alba (Pinaceae) ¹

doi: 10.3732/apps.1200179

Figure Lengend Snippet: Statistics of the 454 transcriptome sequencing run and metrics of the Newbler assembly software.

Article Snippet: Contigs were submitted to the Transcriptome Shotgun Assembly database (TSA) at the National Center for Biotechnology Information (NCBI) (accession no.: JV134525–JV157085).

Techniques: Sequencing, Software

Journal: Scientific Reports

Article Title: Exploring the transcriptome of immature stages of Ornithodoros hermsi , the soft-tick vector of tick-borne relapsing fever

doi: 10.1038/s41598-024-62732-6

Figure Lengend Snippet: Putative anti-clotting-related proteins found in Ornithodoros hermsi transcriptome. ClustalW sequence alignment showing amino acid similarity among O . hermsi transcripts and characterized anti-clotting proteins from different soft tick species. Orange box highlights the RGD domain. GenBank accession codes are provided before sequences’ names.

Article Snippet: The DNA coding sequences (CDS) with an open reading frame (ORF) of at least 100 nucleotides were extracted based on BLASTp results from several databases, including subsets of the non-redundant and transcriptome shotgun assembly from National Center for Biotechnology Information (NCBI) databases (chelicerata, Rickettsiales, and Borreliaceae), RefSeq invertebrate ( https://ftp.ncbi.nlm.nih.gov/refseq/release/invertebrate/ ), RefSeq protozoa ( https://ftp.ncbi.nlm.nih.gov/refseq/release/protozoa/ ), RefSeq mitochondrion ( https://ftp.ncbi.nlm.nih.gov/refseq/release/mitochondrion/ ), tick genomes , mouse genome, and virus-phage.

Techniques: Coagulation, Sequencing

Journal: Data in Brief

Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

doi: 10.1016/j.dib.2020.105917

Figure Lengend Snippet: Cumulative length (A) and sorted transcripts length (B) of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

Techniques:

Journal: Data in Brief

Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

doi: 10.1016/j.dib.2020.105917

Figure Lengend Snippet: Completeness scores of the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

Techniques:

Journal: Data in Brief

Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

doi: 10.1016/j.dib.2020.105917

Figure Lengend Snippet: Summary of ORFs predicted in the de novo assembled transcriptomes of the native oleaginous microalgae Ankistrodesmus sp., Chlorella sp., and Scenedesmus sp.

Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

Techniques:

Journal: Data in Brief

Article Title: Dataset of de novo assembly and functional annotation of the transcriptomes of three native oleaginous microalgae from the Peruvian Amazon

doi: 10.1016/j.dib.2020.105917

Figure Lengend Snippet:

Article Snippet: , Also, transcriptome shotgun assembly sequences database (fasta.gz format) and functional annotation results are hosted in the public repository Discover Mendeley Data ( https://data.mendeley.com/datasets/47wdjmw9xr/1 )..

Techniques: Sequencing, Functional Assay, Purification, Cell Culture, Construct, Software, Isolation